Data processing and statistical analysis of the metabolic profiles of Haslea ostrearia
Metabolome of of the marine diatom Haslea ostrearia.
Bacteria were isolated from Haslea ostrearia isolates cultivated in ES 1/3 medium in laboratory conditions over a 3-month period. These microalgal isolates were recovered from four sites on the French Atlantic coast: Bouin , La Barre-de-Monts (46.90 N; 2.11°W), Isle de Ré (46.22 N; 1.45°W), and La Tremblade (45.80 N; 1.15°W) . Data processing and statistical analysis of the metabolic profiles were performed on an LC/MS Metabolomics Discovery Workflow using Mass Profiler Professional Software and an Agilent 1290 Infinity II LC system coupled to an Agilent 6540 UHD Accurate-Mass QTOF hybrid mass spectrometer (Agilent Technologies, Waldbronn, Germany) equipped with a dual electrospray ionization (ESI) source.
The full history (tools, parameters, input and output data
files) is publicly available on http://dx.doi.org/10.12770/046e1e6a-864e-48a6-944b-d8613d67de0f
Simple
- Title
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Data processing and statistical analysis of the metabolic profiles of Haslea ostrearia
- Date (Creation)
- 2015-05-19
- Date (Publication)
- 2018-01-22
- Citation identifier
- FR-330-715-368-00032-DATARMOR_BIOINFO_COSELMAR_HASLEA_OSTREARIA
- Citation identifier
- DOI:10.12770/046e1e6a-864e-48a6-944b-d8613d67de0f
- Abstract
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Metabolome of of the marine diatom Haslea ostrearia.
Bacteria were isolated from Haslea ostrearia isolates cultivated in ES 1/3 medium in laboratory conditions over a 3-month period. These microalgal isolates were recovered from four sites on the French Atlantic coast: Bouin , La Barre-de-Monts (46.90 N; 2.11°W), Isle de Ré (46.22 N; 1.45°W), and La Tremblade (45.80 N; 1.15°W) . Data processing and statistical analysis of the metabolic profiles were performed on an LC/MS Metabolomics Discovery Workflow using Mass Profiler Professional Software and an Agilent 1290 Infinity II LC system coupled to an Agilent 6540 UHD Accurate-Mass QTOF hybrid mass spectrometer (Agilent Technologies, Waldbronn, Germany) equipped with a dual electrospray ionization (ESI) source.
The full history (tools, parameters, input and output data
files) is publicly available on http://dx.doi.org/10.12770/046e1e6a-864e-48a6-944b-d8613d67de0f
- Credit
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Projet COSELMAR - Laboratoire Phycotoxines
- Point of contact
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Organisation name Individual name Electronic mail address Role IFREMER
Mondeguer Florence
Author IFREMER
Publisher
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GEMET - INSPIRE themes, version 1.0
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Habitats and biotopes
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Thèmes Sextant
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/Biological Environment/Bioinformatics
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Type de jeux de donnée ODATIS
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/Sequences
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ODATIS aggregation parameters and Essential Variable names
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Bioinformatics
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- Use limitation
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Data under Licence ouverte / Open licence : http://www.etalab.gouv.fr/pages/licence-ouverte-open-licence-5899923.html
- Access constraints
- Copyright
- Use constraints
- License
- Spatial representation type
- Grid
- Language
- English
- Character set
- UTF8
- Topic category
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- Oceans
- Reference system identifier
- EPSG / WGS 84 (EPSG:4326) / 8.6
- Distribution format
-
Name Version
- OnLine resource
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Protocol Linkage Name WWW:LINK
http://doi.org/10.1016/j.algal.2016.04.011 Publication
NETWORK:LINK
/home/ref-bioinfo-public/ifremer/dyneco/COSELMAR/ WWW:DOWNLOAD-1.0-link--download
https://data-dataref.ifremer.fr/bioinfo/ifremer/dyneco/COSELMAR/ Data access
WWW:LINK
http://dx.doi.org/10.12770/046e1e6a-864e-48a6-944b-d8613d67de0f DOI of the dataset
- Hierarchy level
- Dataset
- Statement
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The interpretation of UHPLC-QTOF-MS metabolomics data set was performed using chemometrics platform Agilent Mass Profiler Professional (MPP)
Metadata
- File identifier
- 046e1e6a-864e-48a6-944b-d8613d67de0f
- Metadata language
- English
- Character set
- UTF8
- Hierarchy level
- Dataset
- Date stamp
- 2021-08-11T16:40:32
- Metadata standard name
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ISO 19115:2003/19139 - SEXTANT
- Metadata standard version
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1.0
- Metadata author
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Organisation name Individual name Electronic mail address Role IFREMER
Mondeguer Florence
Local service desk