Title

Pinctada margaritifera genome assembly, raw reads

Date (Creation)

2018-06-21

Citation identifier

FR-330-715-368-00032-IFR_BIOINFO_GENOME_PINCTADA_MARGARITIFERA

Abstract

Les données de séquences brutes qui ont été utilisées pour assembler le génome de l'huître perlière, Pinctada margaritfera

Credit

Ifremer - Unité Ressources Marines en Polynésie

Point of contact

Organisation name	Individual name	Electronic mail address	Role
IFREMER	Vidal-Dupiol Jeremie	Jeremie.Vidal.Dupiol@ifremer.fr	Author

GEMET - INSPIRE themes, version 1.0

• Habitats and biotopes

Thèmes Sextant

• /Biological Environment/Bioinformatics

ODATIS aggregation parameters and Essential Variable names

• Bioinformatics

Use limitation

Public access

Access constraints

Copyright

Use constraints

Copyright

Language

English

Character set

UTF8

Topic category

• Environment

Reference system identifier

EPSG / WGS 84 (EPSG:4326) / 8.6

Distribution format

Name	Version

OnLine resource

Protocol	Linkage	Name
NETWORK:LINK	/home/ref-bioinfo/ifremer/rmpf/pmarg_genome

Hierarchy level

Dataset

Statement

Draft genome assembly produce by platanus using default parameters. The libraies used are: i) an illumina shotgun library (125pb PE, insert size 400pb, sequencing depht 150X); ii) a 3kb mate paire library (125pb PE, insert size 3000 pb, sequencing depht 50X); iii) a 10kb mate paire library (125pb PE, insert size 10000 pb, sequencing depht 15X). The shotgun library was cleaned using trimmomatic and corrected using SGA-ICE. The mate-paire libraries were cleaned and corrected using NextClip.

Metadata

File identifier

0d2dda11-db53-43f5-b0d4-1acb2ca0bdc4

Metadata language

English

Character set

UTF8

Hierarchy level

Dataset

Date stamp

2023-10-17T14:47:34.868Z

Metadata standard name

ISO 19115:2003/19139 - SEXTANT

Metadata standard version

1.0

Metadata author

Organisation name	Individual name	Electronic mail address	Role
IFREMER	Vidal-Dupiol Jeremie	Jeremie.Vidal.Dupiol@ifremer.fr	Local service desk