RNA-Seq data from sea bass tongue samples exposed to acidification
In European sea bass like in other animals, the tongue plays a fundamental role in the mechanics of food ingestion. It is composed from the surface in depth of mucosa, submucosa, musculature and fibro cartilaginous skeleton. The tunica mucosa exhibits a stratified epithelium interrupted by numerous teeth differently distributed that erupt more or less completely from the layers below. The European sea bass tongue is composed of canine-like teeth, surrounded by taste buds and numerous fungiform and conical papillae. The tongue beeing directly in contact with external environment, the success of the adaptation of fishes to different environments in the context of global change, depends oamong other on the modifications occurring on the tongue structures. The present study investigates the potential effect of ocean acidification on the lingual transcriptome.
Simple
- Title
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RNA-Seq data from sea bass tongue samples exposed to acidification
- Date (Creation)
- 2023-05-02
- Date (Publication)
- 2024-07-29
- Citation identifier
- FR-330-715-368-00032-IFR_BIOINFO_GOUDA_20230503_PHYTNESS_DM
- Abstract
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In European sea bass like in other animals, the tongue plays a fundamental role in the mechanics of food ingestion. It is composed from the surface in depth of mucosa, submucosa, musculature and fibro cartilaginous skeleton. The tunica mucosa exhibits a stratified epithelium interrupted by numerous teeth differently distributed that erupt more or less completely from the layers below. The European sea bass tongue is composed of canine-like teeth, surrounded by taste buds and numerous fungiform and conical papillae. The tongue beeing directly in contact with external environment, the success of the adaptation of fishes to different environments in the context of global change, depends oamong other on the modifications occurring on the tongue structures. The present study investigates the potential effect of ocean acidification on the lingual transcriptome.
- Credit
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IFREMER-RBE-PHYTNESS
- Point of contact
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Organisation name Individual name Electronic mail address Role IFREMER
Publisher IFREMER
Mazurais David
Author IFREMER
Fleury Elodie
Author IFREMER
Auffret Pauline
Author
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GEMET - INSPIRE themes, version 1.0
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Habitats and biotopes
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Thèmes Sextant
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/Biological Environment/Bioinformatics
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ODATIS aggregation parameters and Essential Variable names
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Bioinformatics
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- Use limitation
- CC-BY (Creative Commons - Attribution)
- Access constraints
- License
- Use constraints
- License
- Language
- English
- Character set
- UTF8
- Topic category
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- Environment
- Distribution format
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Name Version
- OnLine resource
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Protocol Linkage Name NETWORK:LINK
/home/ref-bioinfo-public/ifremer/phytness/gouda WWW:DOWNLOAD-1.0-link--download
https://data-dataref.ifremer.fr/bioinfo/ifremer/phytness/gouda Download link
WWW:LINK-1.0-http--link
https://www.ebi.ac.uk/ena/browser/view/PRJEB78433 Publication ENA
- OnLine resource
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Protocol Linkage Name WWW:LINK-1.0-http--metadata-URL
https://doi.org/10.12770/60127fbf-b2d7-48c8-93dc-71394ec7d1de Digital Object Identifier (DOI)
- Hierarchy level
- Dataset
- Statement
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This study aims to compare the transcriptome of sea bass tongues exposed to the ocean acidification predicted by 2100 versus control samples in order to assess physiological effects.
Metadata
- File identifier
- 60127fbf-b2d7-48c8-93dc-71394ec7d1de
- Metadata language
- English
- Character set
- UTF8
- Hierarchy level
- Dataset
- Date stamp
- 2024-07-29T09:04:51.717Z
- Metadata standard name
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ISO 19115:2003/19139 - SEXTANT
- Metadata standard version
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1.0
- Metadata author
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Organisation name Individual name Electronic mail address Role IFREMER
Mazurais David
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