rctB metabarcoding sequencing of Vibrio Harveyi during oyster experimental infections.
Determine the relative abundance of Vibrio Harveyi species (i.e. V. rotiferianus, V. harveyi, V. jasicida, V. owensii) during experimental infections of Crassostrea gigas with herpes virus OsHV-1 microvariants
Simple
- Title
-
rctB metabarcoding sequencing of Vibrio Harveyi during oyster experimental infections.
- Date (Creation)
- 2020-10-01
- Date (Publication)
- 2022-09-16
- Citation identifier
- FR-330-715-368-00032-IFR_BIOINFO_METABARCODING_RCTB
- Citation identifier
- DOI:10.12770/63b02659-cd9d-4834-8e6d-8adfa736755d
- Abstract
-
Determine the relative abundance of Vibrio Harveyi species (i.e. V. rotiferianus, V. harveyi, V. jasicida, V. owensii) during experimental infections of Crassostrea gigas with herpes virus OsHV-1 microvariants
- Credit
-
IFREMER - IHPE
- Point of contact
-
Organisation name Individual name Electronic mail address Role IFREMER
Publisher IFREMER - IHPE
Oyanedel Daniel
Author IFREMER - IHPE
Destoumieux-Garzon Delphine
Author IFREMER
Travers Marie-Agnes
Author IFREMER - IHPE
Lagorce Arnaud
Author
-
GEMET - INSPIRE themes, version 1.0
-
-
Habitats and biotopes
-
-
Thèmes Sextant
-
-
/Biological Environment/Bioinformatics
-
-
Type de jeux de donnée ODATIS
-
-
/Sequences
-
-
ODATIS aggregation parameters and Essential Variable names
-
-
Bioinformatics
-
- Access constraints
- License
- Use constraints
- License
- Spatial representation type
- Grid
- Language
- English
- Character set
- UTF8
- Reference system identifier
- EPSG / WGS 84 (EPSG:4326) / 8.6
Spatial representation info
- Number of dimensions
- 0
- Cell geometry
- Area
- Distribution format
-
Name Version
- OnLine resource
-
Protocol Linkage Name NETWORK:LINK
/home/ref-bioinfo-public/ifremer/ihpe/vharveyi_rctB WWW:DOWNLOAD-1.0-link--download
https://data-dataref.ifremer.fr/bioinfo/ifremer/ihpe/vharveyi_rctB/ Lien de téléchargement
- OnLine resource
-
Protocol Linkage Name WWW:LINK-1.0-http--metadata-URL
https://doi.org/10.12770/63b02659-cd9d-4834-8e6d-8adfa736755d Digital Object Identifier (DOI)
- Hierarchy level
- Dataset
- Statement
-
Juvenile oysters (Crassostrea gigas) were infected simultaneously with herpes virus OsHV-1 and different representative strains belonging to Vibrio Harveyi clade. Animals were sampled at 0, 24h and 48h. On total extracted DNA, rctB metabarcoding was realised to determine the relative abundance of the different species of V. Hareyi clade.
Metadata
- File identifier
- 63b02659-cd9d-4834-8e6d-8adfa736755d
- Metadata language
- English
- Other language
-
Language Character encoding French UTF8
- Character set
- UTF8
- Hierarchy level
- Dataset
- Date stamp
- 2023-07-06T11:56:44.232Z
- Metadata standard name
-
ISO 19115:2003/19139 - SEXTANT
- Metadata standard version
-
1.0
- Metadata author
-
Organisation name Individual name Electronic mail address Role IFREMER
Travers Marie-Agnes
Local service desk