Genetic and epigenetic variations underpin rapid adaptation of oyster populations (Crassostrea gigas) to Pacific Oyster Mortality Syndrome (POMS)
In this study, we aimed at identifying the genetic and epigenetic signatures and their relative contribution to the ongoing adaptation to the mass selective pressure induced by POMS.
Simple
- Title
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Genetic and epigenetic variations underpin rapid adaptation of oyster populations (Crassostrea gigas) to Pacific Oyster Mortality Syndrome (POMS)
- Date (Creation)
- 2020-10-01
- Date (Publication)
- 2023-07-12
- Citation identifier
- FR-330-715-368-00032-BIOINFO_OYSTER_POMS
- Abstract
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In this study, we aimed at identifying the genetic and epigenetic signatures and their relative contribution to the ongoing adaptation to the mass selective pressure induced by POMS.
- Credit
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IHPE
- Point of contact
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Organisation name Individual name Electronic mail address Role UPVD
Gawra Janan
Author IFREMER
De Lorgeril Julien
Author IFREMER
Gueguen Yannick
Author IFREMER
Escoubas Jean Michel
Author IFREMER
Petton Bruno
Author IFREMER
Morga Benjamin
Author IFREMER
Destoumieux-Garzon Delphine
Author IFREMER
Mitta Guillaume
Author IFREMER
Degremont Lionel
Author IFREMER
Vidal Dupiol Jeremie
Author IFREMER
Publisher
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GEMET - INSPIRE themes, version 1.0
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Habitats and biotopes
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Thèmes Sextant
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/Biological Environment/Bioinformatics
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Type de jeux de donnée ODATIS
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/Sequences
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ODATIS aggregation parameters and Essential Variable names
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Bioinformatics
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ODATIS aggregation parameters and Essential Variable names
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Bioinformatics
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- Use limitation
- CC-BY (Creative Commons - Attribution)
- Access constraints
- Copyright
- Use constraints
- License
- Spatial representation type
- Grid
- Language
- English
- Character set
- UTF8
- Topic category
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- Oceans
- Reference system identifier
- EPSG / WGS 84 (EPSG:4326) / 8.6
- Topology level
- Geometry only
- Number of dimensions
- 0
- Cell geometry
- Area
- Distribution format
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Name Version
- OnLine resource
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Protocol Linkage Name NETWORK:LINK
/home/ref-bioinfo-public/ifremer/ihpe/GEM WWW:DOWNLOAD-1.0-link--download
https://data-dataref.ifremer.fr/bioinfo/ifremer/ihpe/GEM/ Download link
- OnLine resource
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Protocol Linkage Name WWW:LINK-1.0-http--metadata-URL
https://doi.org/10.12770/6a9d16eb-d269-4598-9fbd-e67f8bfa7baf Digital Object Identifier (DOI)
- Hierarchy level
- Dataset
- Statement
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In this study, we used a combination of whole exome capture of bisulfite converted DNA, next-generation sequencing and a variuous statistiacal approach to revealed that natural oyster populations differentially exposed to POMS display signatures of selection both in their genome (i.e. single nucleotide polymorphism) and epigenome (i.e. DNA methylation in the CG context).
Metadata
- File identifier
- 6a9d16eb-d269-4598-9fbd-e67f8bfa7baf
- Metadata language
- English
- Character set
- UTF8
- Hierarchy level
- Dataset
- Date stamp
- 2023-10-18T07:41:54.659Z
- Metadata standard name
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ISO 19115:2003/19139 - SEXTANT
- Metadata standard version
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1.0
- Metadata author
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Organisation name Individual name Electronic mail address Role IFREMER
Vidal Dupiol Jeremie
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