Fish NGS sequences associated to cetaceans from eDNA samples
In order to better characterize the fish biodiversity associated to the presence of cetaceans, especially the common Dolphin, from the Bay of Biscay, sequences from a 16S fragment were obtained from water samples acquired close to groups of dolphins.
Simple
- Title
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Fish NGS sequences associated to cetaceans from eDNA samples
- Date (Creation)
- 2023-11-13
- Date (Publication)
- 2024-01-29
- Citation identifier
- FR-330-715-368-00032-IFR_BIOINFO_delmoges_20231123_MARBEC_SL
Citation identifier
- Abstract
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In order to better characterize the fish biodiversity associated to the presence of cetaceans, especially the common Dolphin, from the Bay of Biscay, sequences from a 16S fragment were obtained from water samples acquired close to groups of dolphins.
- Credit
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IFREMER (MARBEC/LEGPM)
- Point of contact
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Organisation name Individual name Electronic mail address Role IFREMER
Publisher IFREMER
Lapegue Sylvie
Author Université de Brest
Malkocs Tamas
Author IFREMER
Cornette Florence
Author La Rochelle Université
Méndez-Fernandez Paula
Author La Rochelle Université
Spitz Jérôme
Author Argaly
Bonin Aurélie
Author IFREMER
Reisser Celine
Author IFREMER
Arnaud-Haond Sophie
Author IFREMER
Noel Cyril
Author Université de Brest
Viricel-Pante Amelia
Author
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GEMET - INSPIRE themes, version 1.0
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Habitats and biotopes
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Thèmes Sextant
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/Biological Environment/Bioinformatics
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ODATIS aggregation parameters and Essential Variable names
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Bioinformatics
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- Use limitation
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CC-BY (Creative Commons - Attribution)
- Access constraints
- License
- Use constraints
- License
- Spatial representation type
- Grid
- Language
- English
- Character set
- UTF8
- Topic category
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- Oceans
- Begin date
- 2022-06-01
- End date
- 2022-06-30
- Reference system identifier
- EPSG / WGS 84 (EPSG:4326) / 8.6
Spatial representation info
- Distribution format
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Name Version
- OnLine resource
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Protocol Linkage Name NETWORK:LINK
/home/ref-bioinfo-extranet/ifremer/marbec/delmoges-fish-2022
- OnLine resource
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Protocol Linkage Name WWW:LINK-1.0-http--metadata-URL
https://doi.org/10.12770/7c2b753e-ba6d-46a9-ba8d-56e5a075970d Digital Object Identifier (DOI)
- Hierarchy level
- Dataset
- Statement
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A total of 21 Waterra capsules were used to samples about 80l of water close to groups of dolphins in the Bay of Biscay in June 2022. DNA was extracted and libraries were construted for a 16S mitochondrial fragment. After purification, 8 replicates of each sample were submitted to NGS sequencing.
Metadata
- File identifier
- 7c2b753e-ba6d-46a9-ba8d-56e5a075970d
- Metadata language
- English
- Character set
- UTF8
- Hierarchy level
- Dataset
- Date stamp
- 2024-09-25T07:17:23.510594Z
- Metadata standard name
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ISO 19115:2003/19139 - SEXTANT
- Metadata standard version
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1.0
- Metadata author
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Organisation name Individual name Electronic mail address Role IFREMER
Lapegue Sylvie
Local service desk