RAD-sequences of Crassostrea gigas X Crassostrea angulata families
512 oysters from 10 F2 and Back-Cross families between the Pacific oyster (Crassostrea gigas) and the Portuguese oyster (Crassostrea angulata) were studied via a RAD sequencing approach in the framework of the ANR project HYSEA.
Simple
- Title
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RAD-sequences of Crassostrea gigas X Crassostrea angulata families
- Date (Creation)
- 2015-01-01
- Date (Publication)
- 2021-11-08
- Citation identifier
- FR-330-715-368-00032-IFR_BIOINFO_SEQ_CRASSOSTREA_GIGAS_ANGULATA
- Abstract
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512 oysters from 10 F2 and Back-Cross families between the Pacific oyster (Crassostrea gigas) and the Portuguese oyster (Crassostrea angulata) were studied via a RAD sequencing approach in the framework of the ANR project HYSEA.
- Credit
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ANR Project HYSEA
- Point of contact
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Organisation name Individual name Electronic mail address Role IFREMER
Publisher IFREMER
Lapegue Sylvie
Author
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GEMET - INSPIRE themes, version 1.0
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Habitats and biotopes
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Thèmes Sextant
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/Biological Environment/Bioinformatics
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Type de jeux de donnée ODATIS
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/Sequences
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ODATIS aggregation parameters and Essential Variable names
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Bioinformatics
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- Use limitation
- Open Licence
- Access constraints
- License
- Use constraints
- License
- Language
- English
- Character set
- UTF8
- Reference system identifier
- EPSG / WGS 84 (EPSG:4326) / 8.6
Spatial representation info
- Distribution format
-
Name Version
- OnLine resource
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Protocol Linkage Name NETWORK:LINK
/home/ref-bioinfo-extranet/ifremer/marbec/hysea
- Hierarchy level
- Dataset
- Statement
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In order to study the hybridization between the two closely related species, Crassostrea gigas and Crassostrea angulata, 10 F2 and BC families were produced in hatchery. The DNA of 512 oysters was extracted and RAD seq libraries were produced. Two flow cells were used on a Hiseq 2500 to sequence (Single Read 100) the 512 individuals.
Metadata
- File identifier
- d354e05c-384f-4a86-9357-9688f01b9eb3
- Metadata language
- English
- Character set
- UTF8
- Hierarchy level
- Dataset
- Date stamp
- 2024-02-28T15:32:53.906Z
- Metadata standard name
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ISO 19115:2003/19139 - SEXTANT
- Metadata standard version
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1.0
- Metadata author
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Organisation name Individual name Electronic mail address Role IFREMER
Lapegue Sylvie
Local service desk