Title

RAD-sequences of Crassostrea gigas X Crassostrea angulata families

Date (Creation)

2015-01-01

Date (Publication)

2021-11-08

Citation identifier

FR-330-715-368-00032-IFR_BIOINFO_SEQ_CRASSOSTREA_GIGAS_ANGULATA

Abstract

512 oysters from 10 F2 and Back-Cross families between the Pacific oyster (Crassostrea gigas) and the Portuguese oyster (Crassostrea angulata) were studied via a RAD sequencing approach in the framework of the ANR project HYSEA.

Credit

ANR Project HYSEA

Point of contact

Organisation name	Individual name	Electronic mail address	Role
IFREMER		sismer@ifremer.fr	Publisher
IFREMER	Lapegue Sylvie	Sylvie.Lapegue@ifremer.fr	Author
IFREMER	Cornette Florence	Florence.Cornette@ifremer.fr	Author
IFREMER	Heurtebise Serge	Serge.Heurtebise@ifremer.fr	Author
IFREMER	Lamy Jean-Baptiste		Author
CNRS	Bierne Nicolas	nicolas.bierne@umontpellier.fr	Author
CNRS	Gagnaire Pierre-Alexandre	pierre-alexandre.gagnaire@umontpellier.fr	Author

GEMET - INSPIRE themes, version 1.0

• Habitats and biotopes

Thèmes Sextant

• /Biological Environment/Bioinformatics

ODATIS aggregation parameters and Essential Variable names

• Bioinformatics

Use limitation

Open Licence

Access constraints

License

Use constraints

License

Language

English

Character set

UTF8

Reference system identifier

EPSG / WGS 84 (EPSG:4326) / 8.6

Distribution format

Name	Version

OnLine resource

Protocol	Linkage	Name
NETWORK:LINK	/home/ref-bioinfo-extranet/ifremer/marbec/hysea

OnLine resource

Protocol	Linkage	Name
DOI	https://doi.org/10.12770/d354e05c-384f-4a86-9357-9688f01b9eb3	Digital Object Identifier (DOI)

Hierarchy level

Dataset

Statement

In order to study the hybridization between the two closely related species, Crassostrea gigas and Crassostrea angulata, 10 F2 and BC families were produced in hatchery. The DNA of 512 oysters was extracted and RAD seq libraries were produced. Two flow cells were used on a Hiseq 2500 to sequence (Single Read 100) the 512 individuals.

Metadata

File identifier

d354e05c-384f-4a86-9357-9688f01b9eb3

Metadata language

English

Character set

UTF8

Hierarchy level

Dataset

Date stamp

2024-09-24T15:14:55.007953Z

Metadata standard name

ISO 19115:2003/19139 - SEXTANT

Metadata standard version

1.0

Metadata author

Organisation name	Individual name	Electronic mail address	Role
IFREMER	Lapegue Sylvie	Sylvie.Lapegue@ifremer.fr	Local service desk