Title

Metabarcoding of microbiota from biopreserved cold-smoked salmon for MASTER project, 2022

Date (Creation)

2022-07-26

Date (Publication)

2023-09-06

Citation identifier

FR-330-715-368-00032-IFR_BIOINFO_MICROBIOTA_SALMON_2022

Abstract

The objective is to study the impact of three Carnobacterium strains inoculated in cold-smoked salmon slices at different concentrations on the microbiome, chemical and sensory quality of the product during the storage under vacuum at chilled temperature

Credit

Ifremer - Laboratoire Ecosystemes microbiens et molécules marines pour les biotechnologies / MASTER project

Point of contact

Organisation name	Individual name	Electronic mail address	Role
IFREMER		sismer@ifremer.fr	Publisher
IFREMER	Leroi Francoise	Francoise.Leroi@ifremer.fr	Author

GEMET - INSPIRE themes, version 1.0

• Habitats and biotopes

Thèmes Sextant

• /Biological Environment/Bioinformatics

ODATIS aggregation parameters and Essential Variable names

• Bioinformatics

User contact info

Organisation name	Individual name	Electronic mail address	Role

Use limitation

CC-BY-NC-ND (Creative Commons - Attribution, No commercial usage, No modification)

Access constraints

License

Use constraints

License

Spatial representation type

Grid

Language

English

Character set

UTF8

Reference system identifier

EPSG / WGS 84 (EPSG:4326) / 8.6

Distribution format

Name	Version

OnLine resource

Protocol	Linkage	Name
NETWORK:LINK	/home/ref-bioinfo/ifremer/masae/master/

Hierarchy level

Dataset

Statement

The DNA was extrated from all samples following the internal method in MASAE-EM3B. Region V3- V4 of the 16S-RNA gene was amplified with PrimerF CCTACGGGNGGCWGCAG and PrimerR GACTACHVGGGTATCTAATCC. The Illumina MiSeq sequencing was subcontracted to the Microsynth society.

Metadata

File identifier

d8b27b6a-ccfe-4314-8f57-1ff3bcd7b3e9

Metadata language

English

Character set

UTF8

Hierarchy level

Dataset

Date stamp

2023-10-17T13:44:11.621Z

Metadata standard name

ISO 19115:2003/19139 - SEXTANT

Metadata standard version

1.0

Metadata author

Organisation name	Individual name	Electronic mail address	Role
IFREMER	Leroi Laura	Laura.Leroi@ifremer.fr	Local service desk