DNA sequencing of Crassostrea gigas Pacific oyster spat infected in the wild with OsHV-1 virus
DNA sequencing of Crassostrea gigas Pacific oyster spat infected in the wild with OsHV-1 virus in 4 French oyster basins (Marennes Oleron Bay, Arcachon bay, Rade de Brest and Thau lagoon).
Simple
- Title
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DNA sequencing of Crassostrea gigas Pacific oyster spat infected in the wild with OsHV-1 virus
- Date (Creation)
- 2021-12-17
- Date (Publication)
- 2022-01-27
- Citation identifier
- FR-330-715-368-00032-IFR_BIOINFO_DNA_SEQ_CRASSOSTREA_OsHV-1
- Abstract
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DNA sequencing of Crassostrea gigas Pacific oyster spat infected in the wild with OsHV-1 virus in 4 French oyster basins (Marennes Oleron Bay, Arcachon bay, Rade de Brest and Thau lagoon).
- Credit
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IFREMER, Unité Adaptation Santé des Invertébrés Marins (ASIM)
- Point of contact
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Organisation name Individual name Electronic mail address Role IFREMER
PELLETIER Camille
Author IFREMER
Publisher
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GEMET - INSPIRE themes, version 1.0
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Habitats and biotopes
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Thèmes Sextant
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/Biological Environment/Bioinformatics
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ODATIS aggregation parameters and Essential Variable names
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Bioinformatics
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- Use limitation
- CC-BY-NC (Creative Commons - Attribution, Pas d'utilisation commerciale)
- Access constraints
- License
- Use constraints
- License
- Language
- English
- Character set
- UTF8
- Begin date
- 2021-05-24
- End date
- 2022-08-31
Vertical extent
- Supplemental Information
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Suivi des mortalités d'huitres pendant les épisodes de mortalité d'huitres, été 2021
- Reference system identifier
- EPSG / WGS 84 (EPSG:4326) / 8.6
Spatial representation info
Spatial representation info
- Distribution format
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Name Version
- OnLine resource
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Protocol Linkage Name NETWORK:LINK
/home/ref-bioinfo/ifremer/sg2m/gt-huitre-viral-diversity
OnLine resource
- OnLine resource
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Protocol Linkage Name WWW:LINK-1.0-http--metadata-URL
https://doi.org/10.12770/e12a5d05-cc95-407f-b0f7-c86e79cc5b3a Digital Object Identifier (DOI)
- Hierarchy level
- Dataset
- Statement
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C. gigas oysters were deposited in 4 oyster basins: La Floride (Marennes Oleron bay), Grahude (Arcachon bay), Rade de Brest and Thau lagoon. During mortality events caused by OsHV-1, the moribund oysters were sampled. A part of the moribund oysters was used to perform DNA extractions (Magattract kit). The extracted DNA was then sequenced using the NovaSeq 6000 technology on the Genome Quebec sequencing platform. (see metadata)
Metadata
- File identifier
- e12a5d05-cc95-407f-b0f7-c86e79cc5b3a
- Metadata language
- English
- Character set
- UTF8
- Hierarchy level
- Dataset
- Date stamp
- 2024-02-28T15:31:44.67Z
- Metadata standard name
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ISO 19115:2003/19139 - SEXTANT
- Metadata standard version
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1.0
- Metadata author
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Organisation name Individual name Electronic mail address Role IFREMER
Camille PELLETIER
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