Title

Genome of hydrothermal shrimp Rimicaris exoculata

Date (Creation)

2023-01-11

Date (Publication)

2024-01-29

Citation identifier

FR-330-715-368-00032-IFR_BIOINFO_rimicaris_exoculata_genome_20230203_LMEE_VCG

Abstract

Raw data of the long-read sequencing of the hydrothermal shrimp Rimicaris exoculata genome performed using a PacBio Sequel2 and HiFi technology on a SMRTcell

Credit

IFREMER (REM/BEEP/LM2E)

Point of contact

Organisation name	Individual name	Electronic mail address	Role
IFREMER		sismer@ifremer.fr	Publisher
IFREMER	Cambon Marie-Anne	Marie.Anne.Cambon@ifremer.fr	Author
IFREMER	Cormier Alexandre	Alexandre.Cormier@ifremer.fr	Author
IFREMER	Aube Johanne	Johanne.Aube@ifremer.fr	Author
IFREMER	Cueff-Gauchard Valerie	Valerie.Cueff.Gauchard@ifremer.fr	Author

GEMET - INSPIRE themes, version 1.0

• Habitats and biotopes

Thèmes Sextant

• /Biological Environment/Bioinformatics

ODATIS aggregation parameters and Essential Variable names

• Bioinformatics

Use limitation

CC-BY-NC-ND (Creative Commons - Attribution, No commercial usage, No modification)

Access constraints

License

Use constraints

License

Spatial representation type

Grid

Language

English

Character set

UTF8

Topic category

• Oceans

Reference system identifier

EPSG / WGS 84 (EPSG:4326) / 8.6

Distribution format

Name	Version

OnLine resource

Protocol	Linkage	Name
NETWORK:LINK	/home/ref-bioinfo/ifremer/lmee/rimicaris_exoculata_genome

Hierarchy level

Dataset

Statement

Raw data from the long-read sequencing of the hydrothermal shrimp Rimicaris exoculata genome: i. shrimp from the Snake Pit site - Elan mission HERMINE2 2022: HER2-PL2049-07-FISH1-CR12-muscle ; ii. DNA extraction of muscle with QIAGEN Tip20/G kit ; iii. sequencing on 1 SMRTcell launched on a PacBio Sequel2 with HiFi technology.

Metadata

File identifier

e2ae7d37-cee5-4a00-b9c2-96e00099ca00

Metadata language

English

Character set

UTF8

Hierarchy level

Dataset

Date stamp

2024-01-29T14:23:43.029Z

Metadata standard name

ISO 19115:2003/19139 - SEXTANT

Metadata standard version

1.0

Metadata author

Organisation name	Individual name	Electronic mail address	Role
IFREMER	Cueff-Gauchard Valerie	Valerie.Cueff.Gauchard@ifremer.fr	Local service desk