In situ Alexandrium minutum RNA sequencing

Date(s) (Publication)
Author(s): , ,
Affiliation(s) 1 : ECOLE
2 : IFREMER
Publisher(s): IFREMER
Credit Ifremer - Dyneco - Laboratoire d'Ecologie Pélagique - Daoulex project
DOI 10.12770/9d4131da-b33b-429b-9cdd-e7325b06f7d8
Abstract RNA sequencing of blooms of the toxic dinoflagellate Alexandium minutum. We sequenced three consecutive blooms (2013, 2014, 2015) at a single site (Daoulas) and multiple other bloom from all around the Bay of Brest (SPX samples), Sillon des Anglais, Penzé river, and one sample (Roz) near Daoulas.
Keywords Habitats and biotopes
Lineage Sample collection and RNA preparation (see details in Metegnier et al., (a,b), submitted)

During three consecutive summers (2013, 2014 and 2015), temporal sampling was conducted in the bay of Brest at a single site (48.350543, -4.292507). When the water temperature reached 15°C during spring, a weekly survey of A. minutum densities was performed by the national phytoplankton network (REPHY). When A. minutum densities reached 10 000 cells.L-1 and until densities dropped below this threshold in
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Temporal Extent 2013-07-05 - 2015-08-03